Koetai SPARQL examples

Community-curated SPARQL example queries for multiple life-science endpoints.

View the Project on GitHub Koetai/sparql-examples

homonym_counts_total_by_rank

rq turtle/ttl

PREFIX gbif: https://rs.gbif.org/terms/ PREFIX status: https://rs.gbif.org/terms/status/ PREFIX rdfs: http://www.w3.org/2000/01/rdf-schema# PREFIX dwc: http://rs.tdwg.org/dwc/terms/ SELECT (COUNT(*) AS ?pairs) (COUNT(DISTINCT ?name) AS ?names) WHERE { ?a rdfs:label ?name ; gbif:rank ?rank ; gbif:taxonomicStatus status:accepted ; dwc:kingdom ?kA . ?b rdfs:label ?name ; gbif:rank ?rank ; gbif:taxonomicStatus status:accepted ; dwc:kingdom ?kB . FILTER(STR(?a) < STR(?b)) FILTER(STR(?kA) != STR(?kB)) FILTER(STR(?kA) != "incertae sedis" && STR(?kB) != "incertae sedis") }

Use at

PREFIX gbif:   <https://rs.gbif.org/terms/>
PREFIX status: <https://rs.gbif.org/terms/status/>
PREFIX rdfs:   <http://www.w3.org/2000/01/rdf-schema#>
PREFIX dwc:    <http://rs.tdwg.org/dwc/terms/>
SELECT (COUNT(*) AS ?pairs) (COUNT(DISTINCT ?name) AS ?names) WHERE {
  ?a rdfs:label ?name ; gbif:rank ?rank ; gbif:taxonomicStatus status:accepted ; dwc:kingdom ?kA .
  ?b rdfs:label ?name ; gbif:rank ?rank ; gbif:taxonomicStatus status:accepted ; dwc:kingdom ?kB .
  FILTER(STR(?a) < STR(?b)) FILTER(STR(?kA) != STR(?kB))
  FILTER(STR(?kA) != "incertae sedis" && STR(?kB) != "incertae sedis")
}
# by rank: replace projection with  SELECT ?rank (COUNT(*) AS ?n) … GROUP BY ?rank ORDER BY DESC(?n)
graph TD
classDef projected fill:lightgreen;
classDef literal fill:orange;
classDef iri fill:yellow;
  v3("?a")
  v4("?b")
  v1("?kA")
  v2("?kB")
  v5("?name"):::projected 
  v8("?names")
  v7("?pairs")
  v6("?rank")
  c5([https://rs.gbif.org/terms/status/accepted]):::iri 
  f0[["str(?kA) != 'incertae sedis'str(?kB) != 'incertae sedis'"]]
  f0 --> v1
  f0 --> v2
  f1[["str(?kA) != str(?kB)"]]
  f1 --> v1
  f1 --> v2
  f2[["str(?a) < str(?b)"]]
  f2 --> v3
  f2 --> v4
  v3 --"rdfs:label"-->  v5
  v3 --https://rs.gbif.org/terms/rank-->  v6
  v3 --https://rs.gbif.org/terms/taxonomicStatus-->  c5
  v3 --http://rs.tdwg.org/dwc/terms/kingdom-->  v1
  v4 --"rdfs:label"-->  v5
  v4 --https://rs.gbif.org/terms/rank-->  v6
  v4 --https://rs.gbif.org/terms/taxonomicStatus-->  c5
  v4 --http://rs.tdwg.org/dwc/terms/kingdom-->  v2
  bind5[/"count(*)"/]
  bind5 --as--o v7
  bind6[/"count(?name)"/]
  v5 --o bind6
  bind6 --as--o v8